WHAP is a statistical test for case/control association studies. It takes advantage of the known correlation structure between SNPs in the HapMap in order to improve power over traditional methods. The full details are described in
This server performs the weighted haplotype association (WHAP) test on moderately sized studies. It accepts as input a set of dbSNP rsids which are genotyped over a set of cases and controls. Plink is used to estimate Hardy-Weinberg equilibrium for quality control.
This web-site is based upon work supported by the National Science Foundation under Grant No. 0513599. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.